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Laboratory microbiology, Study notes of Medical Microbiology

Microbiology Bsc Dr. Shubhi joshi 2024

Typology: Study notes

2023/2024

Uploaded on 06/29/2025

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COMPOUND MICROSCOPE
A compound microscope is a type of high-resolution optical microscope that utilizes two sets
of lenses to magnify specimens and produce a clear, two-dimensional image (an image that
exists on a flat surface, having only two dimensions: length and width). It is one of the most
commonly used instruments in microbiology laboratories for observing the morphology,
arrangement and staining characteristics of microorganisms such as bacteria, fungi and
protozoa.
The term "compound" refers to the use of multiple lenses working in combination to enhance
magnification. Specifically, a compound microscope uses:
An objective lens, located near the specimen.
An ocular (eyepiece) lens, through which the observer views the image.
This dual-lens system allows for greater magnification and resolution than a simple
microscope, which uses only a single lens.
Figure 1. Components of a compound microscope.
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COMPOUND MICROSCOPE

A compound microscope is a type of high-resolution optical microscope that utilizes two sets of lenses to magnify specimens and produce a clear, two-dimensional image ( an image that exists on a flat surface, having only two dimensions: length and width ). It is one of the most commonly used instruments in microbiology laboratories for observing the morphology, arrangement and staining characteristics of microorganisms such as bacteria, fungi and protozoa. The term "compound" refers to the use of multiple lenses working in combination to enhance magnification. Specifically, a compound microscope uses:

  • An objective lens , located near the specimen.
  • An ocular (eyepiece) lens , through which the observer views the image. This dual-lens system allows for greater magnification and resolution than a simple microscope, which uses only a single lens. Figure 1. Components of a compound microscope.

Working principle of a compound microscope

  1. The specimen or item to be studied is often mounted on a clear glass slide and placed on the stage between the condenser and objective lenses.
  2. A condenser lens directs visible light from the base to the specimen.
  3. The objective lens collects the light emitted by the specimen and magnifies it to generate the main image within the body tube. The ocular lens magnifies this image once more.
  4. When a higher magnification is necessary, the nose piece is turned after low power focusing to align the objective of a higher power (often 45X) with the lit portion of the slide.
  5. Very high magnification is occasionally necessary. Thus, an oil immersion objective lens (often 100X) is used.
  6. The image can be seen through the eyepiece. Components of a compound microscope The parts of a compound microscope can be classified into:
  • Non-optical parts
  • Optical parts Non-optical parts of compound microscope
  • Base The base or the foot is U or horseshoe-shaped. It is a metallic structure supporting the entire microscope.
  • Pillar This makes the key connection between the base and the arm possible.
  • Arm The arm is also called the limb and is a metallic handle that acts as a connection between the arm to the inclined joint. The stage and the body tube are supported by the arm.
  • Inclination Joint If the observation has to be done in a sitting posture, then the microscope has to be tilted using the inclination joint.
  • Stage A metallic platform is fitted to the lower section of the arm and has a hole in the center.
  • Body Tube

APPLICATIONS OF A COMPOUND MICROSCOPE

The compound microscope is a fundamental tool in microbiology. It is widely used for the observation and analysis of microorganisms and cellular structures. Its high magnification and resolution capabilities make it essential for both teaching and diagnostic purposes in medical and research laboratories.

1. Clinical diagnosis of infectious diseases

  • It is useful in observation of stained bacterial smears (e.g., Gram staining, Ziehl-Neelsen staining for acid-fast bacilli).
  • It is used for identification of bacterial morphology (cocci, bacilli, spirilla) and arrangements (chains, clusters).
  • It is used for identification detection of fungi such as Candida and Aspergillus in clinical samples. 2. Teaching and demonstration It is extensively used in medical, dental and allied health sciences education to teach microscopic anatomy, microbiological techniques and staining procedures. It allows students to visualize microbial diversity, morphology and structural differences among organisms. 3. Research and laboratory studies
  • Compound microscope is useful in microbiological research involving growth characteristics, cellular morphology and effects of antimicrobial agents.
  • It is used in antibiotic susceptibility studies, cytological studies and morphological analysis of mutants.
  • It is useful in studying cellular responses to various stimuli, such as chemical agents or environmental stress. 4. Microscopic examination of cultures
  • Assessment of pure vs. mixed cultures by observing colony characteristics and cell morphology.
  • Differentiation of closely related microbial species based on size, shape and staining characteristics.

5. Examination of Clinical Specimens

  • Analysis of urine, sputum, cerebrospinal fluid and pus samples for the presence of leukocytes, epithelial cells and microorganisms.
  • Helps assess inflammatory responses and guides further testing or culture. 6. Application in staining techniques
  • Essential for interpreting results of various staining techniques:
  • Gram stain for differentiating Gram-positive and Gram-negative bacteria.
  • Acid-fast stain for identifying Mycobacterium tuberculosis.
  • Capsule stain, spore stain and other structural stains. 7. Monitoring of microbial contamination
  • Used in environmental microbiology to detect contaminants in water, air, food and pharmaceutical samples.
  • Helps ensure quality control in microbiological laboratories and industries. ADVANTAGES OF COMPOUND MICROSCOPE
  1. High magnification: Compound microscopes can magnify objects up to 3,000 times their original size, making them invaluable for studying minute details of cells, microorganisms and other small objects.
  2. Wide field of view: Compound microscopes typically have a wider field of view than simple microscopes, allowing for the observation of a larger area of the specimen at once.
  3. Versatility: Compound microscopes can be used to study a wide variety of specimens, including living cells, bacteria, viruses and other microscopic organisms.
  4. Ability to view live specimens: Compound microscopes can be used to observe live specimens, providing valuable insights into cellular processes and organism behavior.
  5. Relatively affordable: Compound microscopes are relatively affordable compared to other types of microscopes, such as electron microscopes. LIMITATIONS OF COMPOUND MICROSCOPE
  6. Limited resolution: Compound microscopes are limited in their ability to resolve fine details, especially at higher magnifications.
  • The third set of magnetic lenses called projector (ocular) lenses produce the final further magnified image.
  • Each of these lenses acts as an image magnifier all the while maintaining an incredible level of detail and resolution. 3. Specimen Holder
  • The specimen holder is an extremely thin film of carbon or collodion held by a metal grid. 4. Image viewing and Recording System
  • The final image is projected on a fluorescent screen.
  • Below the fluorescent screen is a camera for recording the image. WORKING PRINCIPLE OF ELECTRON MICROSCOPE Figure 2. Components of a scanning electron microscope. Electron microscopes use signals arising from the interaction of an electron beam with the sample to obtain information about structure, morphology and composition.
  1. The electron gun generates electrons.
  1. Two sets of condenser lenses focus the electron beam on the specimen and then into a thin tight beam.
  2. To move electrons down the column, an accelerating voltage (mostly between 100 kV- 1000 kV) is applied between the tungsten filament and anode.
  3. The specimen to be examined is made extremely thin, at least 200 times thinner than those used in the optical microscope. Ultra-thin sections of 20-100 nm are cut which is already placed on the specimen holder.
  4. The electronic beam passes through the specimen and electrons are scattered depending upon the thickness or refractive index of different parts of the specimen.
  5. The denser regions in the specimen scatter more electrons and therefore appear darker in the image since fewer electrons strike that area of the screen. In contrast, transparent regions are brighter.
  6. The electron beam coming out of the specimen passes to the objective lens, which has high power and forms the intermediate magnified image.
  7. The ocular lenses then produce the final further magnified image. TYPES OF AN ELECTRON MICROSCOPE There are two types of electron microscopes, with different operating styles: 1. Transmission Electron Microscope (TEM) The transmission electron microscope is used to view thin specimens through which electrons can pass generating a projection image. The TEM is analogous in many ways to the conventional (compound) light microscope. TEM is used to image the interior of cells (in thin sections), the structure of protein molecules (contrasted by metal shadowing), the organization of molecules in viruses and cytoskeletal filaments (prepared by the negative staining technique) and the arrangement of protein molecules in cell membranes (by freeze-fracture). 2. Scanning Electron Microscope (SEM) Conventional scanning electron microscopy depends on the emission of secondary electrons from the surface of a specimen. Because of its great depth of focus, a scanning electron microscope is the EM analog of a stereo light microscope. It provides detailed images of the surfaces of cells and whole organisms that are not possible by TEM. It can also be used for particle counting and size determination and for process control. It is termed a scanning

Cryo-electron microscopy (Cryo-EM), a specialized form of EM, is used to determine the three-dimensional structure of proteins, enzymes and large molecular complexes at near- atomic resolution, revolutionizing drug discovery and molecular medicine.

6. Nanotechnology and drug delivery studies EM is used to evaluate nanoparticles, liposomes and other drug delivery systems, allowing visualization of their structure, uniformity and interaction with cells. This has implications in targeted therapies, vaccine delivery and cancer treatment. 7. Histopathology and tissue ultrastructure EM provides detailed images of cellular and subcellular structures in tissue samples, aiding in the diagnosis of various diseases, including renal, muscular and neurodegenerative disorders. **ADVANTAGES OF ELECTRON MICROSCOPE

  1. High magnification** Electron microscopes can achieve magnifications up to 2 million times, far exceeding the capabilities of light microscopes. This allows visualization of ultrastructural details of microorganisms, such as viruses, organelles and macromolecular complexes. 2. High resolution Due to the short wavelength of electrons, EM provides a resolution of up to 0.1 nanometers, enabling clear distinction between closely spaced structural components within a cell. This is essential for detailed morphological studies in microbiology. 3. Minimal distortion with proper preparation Although sample preparation is intricate, when performed correctly, it maintains structural integrity, allowing for high-fidelity imaging of cellular and viral architecture. Unlike light microscopy, there is minimal distortion from diffraction limitations. 4. Greater depth of field Scanning electron microscopes (SEM) offer an increased depth of field compared to optical microscopes, providing three-dimensional images of the specimen's surface. This is especially beneficial for visualizing the complex surface features of microbial cells. 5. Diverse applications

Electron microscopy is widely applicable in fields such as:

  • Virology – for viral particle identification and classification.
  • Bacteriology & mycology – for cell wall and organelle analysis.
  • Nanomedicine – for assessing drug delivery systems and nanoparticles.
  • Tissue pathology – for identifying ultrastructural changes in infected tissues. LIMITATIONS OF ELECTRON MICROSCOPE
  1. Inability to observe live specimens Electron microscopy requires specimens to be viewed in a high-vacuum environment. As a result, live organisms cannot be studied, limiting the ability to observe dynamic biological processes or real-time interactions between pathogens and host cells.
  2. Specimens must be ultrathin Particularly in Transmission Electron Microscopy (TEM), the electron beam has limited penetration power, necessitating the preparation of ultrathin sections (typically less than 100 nm thick). This involves complex steps like dehydration, embedding in resin and sectioning with an ultramicrotome.
  3. Complete dehydration required Since electron microscopes operate under a vacuum, specimens must be fully dry. This requirement can alter biological structures and may introduce preparation artifacts that affect the interpretation of the image.
  4. High cost and maintenance requirements Electron microscopes are expensive to purchase, operate and maintain. They require specialized infrastructure, including vibration-free rooms, stable power supplies and cooling systems, making them less accessible in resource-limited settings.
  5. Requires skilled operation and interpretation Operating an electron microscope and interpreting the images requires specialized training. Misinterpretation can easily occur without adequate understanding of the imaging principles and biological context.