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DNA Extraction from Kiwifruit, Study notes of Genetics

DNA is present in the cells of all living organisms. This procedure is designed to extract DNA from kiwi in sufficient quantity to be seen and spooled.

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2021/2022

Uploaded on 09/27/2022

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DNA Extraction from Kiwifruit
Student Instructions
Introduction
DNA is present in the cells of all living organisms. This procedure is designed to extract DNA from
kiwi in sufficient quantity to be seen and spooled. . Because DNA exists inside of cell and ultimately
inside of the nucleus proteins must be denatured to locate the DNA. There are different proteins
that form the membranes of the organelles and that allow DNA to coil so that it can fit inside of
the nucleus. This activity is ideal for students to work in pairs, but each student will have a tube of
DNA at the end.
Some questions to get you thinking about today's lab:
1. One way to purify a molecule is to get rid of everything but that molecule. If we want to
isolate DNA from kiwifruit, what do we have to get rid of?
2. What materials would you use to do that?
3. What can we do with the DNA once we've purified it?
Materials
ziplock bags
jar or beaker that fits strainer or funnel strainer or funnel
cheese cloth (cut to cover the funnel)
ice water bath (a large mixing bowl works well)
extraction solution
kiwifruit
cold 95% ethanol or isopropanol
small test tubes (1 per student)
Protocol
1. Get 6 pieces of kiwi and put them in a ziplock bag.
2. Add 20 ml of extraction solution to the ziplock bag. Make sure the bag is closed
without much extra air. Mush the kiwi thoroughly but carefully so the bag doesnÕt
break, for about 5 minutes. What does mushing the kiwi do?
3. What do you think the extraction solution is? What does it do to the kiwi?
4. Cool the kiwi mixture in the ice bath for a minute. Then mush the kiwi more. Cool,
then mush. Repeat this several times. Why do we cool the mixture?
5. Filter the mixture through the cheesecloth. All the groups can combine their
mixtures at this point, to filter together. What is being filtered out? What is going
through the filter?
6. Dispense approximately 2 ml of kiwi solution into each test tube, one for each
student.
7. Being careful not to shake the tubes, add approximately 2 ml of cold 95% ethanol to
each tube. What do you think the ethanol does? Why do we want it cold?
8. Take a look at your tube. What do you see in the top portion of the liquid?
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DNA Extraction from Kiwifruit

Student Instructions

Introduction

DNA is present in the cells of all living organisms. This procedure is designed to extract DNA from kiwi in sufficient quantity to be seen and spooled.. Because DNA exists inside of cell and ultimately inside of the nucleus proteins must be denatured to locate the DNA. There are different proteins that form the membranes of the organelles and that allow DNA to coil so that it can fit inside of the nucleus. This activity is ideal for students to work in pairs, but each student will have a tube of DNA at the end.

Some questions to get you thinking about today's lab:

  1. One way to purify a molecule is to get rid of everything but that molecule. If we want to isolate DNA from kiwifruit, what do we have to get rid of?
  2. What materials would you use to do that?
  3. What can we do with the DNA once we've purified it?

Materials

  • ziplock bags
  • jar or beaker that fits strainer or funnel strainer or funnel
  • cheese cloth (cut to cover the funnel)
  • ice water bath (a large mixing bowl works well)
  • extraction solution
  • kiwifruit
  • cold 95% ethanol or isopropanol
  • small test tubes (1 per student)

Protocol

  1. Get 6 pieces of kiwi and put them in a ziplock bag.
  2. Add 20 ml of extraction solution to the ziplock bag. Make sure the bag is closed without much extra air. Mush the kiwi thoroughly but carefully so the bag doesnÕt break, for about 5 minutes. What does mushing the kiwi do?
  3. What do you think the extraction solution is? What does it do to the kiwi?
  4. Cool the kiwi mixture in the ice bath for a minute. Then mush the kiwi more. Cool, then mush. Repeat this several times. Why do we cool the mixture?
  5. Filter the mixture through the cheesecloth. All the groups can combine their mixtures at this point, to filter together. What is being filtered out? What is going through the filter?
  6. Dispense approximately 2 ml of kiwi solution into each test tube, one for each student.
  7. Being careful not to shake the tubes, add approximately 2 ml of cold 95% ethanol to each tube. What do you think the ethanol does? Why do we want it cold?
  8. Take a look at your tube. What do you see in the top portion of the liquid?

Teacher's Version

Teacher Guide: What is DNA? DNA Extraction from

Kiwifruit

Introduction

DNA is present in the cells of all living organisms. This procedure is designed to extract DNA from kiwi in sufficient quantity to be seen and spooled. Because DNA exists inside of cell and ultimately inside of the nucleus proteins must be denatured to locate the DNA. There are different proteins that form the membranes of the organelles and that allow DNA to coil so that it can fit inside of the nucleus. This activity is ideal for students to work in pairs, but each student will have a tube of DNA at the end.

Management & Grouping Procedures

1. Students will work in predetermined groups of 3.

2. Students will be assigned specific jobs within the group

Example: time keeper and organizer

Collect materials and clean up

*All students will be responsible for making and

recording observations

Safety

Students will be reminded of the following safety rules

1. Do no perform any experiment unless you are given

permission by your teacher.

2. Do not touch, taste, or smell any of the lab materials.

3. No eating or drinking in the lab.

Phase of Inquiry: Explore and Explain

Some questions to get you thinking about the lab:

One way to purify a molecule is to get rid of everything but that

molecule. If we want to isolate DNA from kiwifruit, what do we have

to get rid of?

All parts of the cell besides the DNA, i.e. cell wall (kiwi is a plant, after all), cell membrane, mitochondria, Golgi apparatus, endoplasmic reticulum, vacuoles, lysosomes, nuclear membrane, etc.

What materials would you use to do that?

Something to mush the cells (blender or your hands), something to destroy membranes (soap dissolves them), something to get rid of proteins and carbohydrates (salt causes them to precipitate), something to separate insoluble cell stuff from soluble DNA, and something to help get the DNA (alcohol precipitates it).

Protocol - These are the directions for each pair. Students will

complete the critical thinking questions upon their completion of the

lab.

  1. Get 6 pieces of kiwi and put them in a ziplock bag.
  2. Add 20 ml of extraction solution to the ziplock bag. Make sure the bag is closed without much extra air. Mush the kiwi thoroughly but carefully so the bag doesn’t break, for about 5 minutes. What does mushing the kiwi do? Breaks the cell wall
  3. What do you think the extraction solution is? What does it do to the kiwi? Soap will cause the solution to bubble so students should be able to guess what's in here. The soap destroys the cell and nuclear membranes, allowing the DNA to get out. There is also salt in the extraction solution, which causes the proteins and carbohydrates to precipitate, while the DNA remains in solution.
  4. Cool the kiwi mixture in the ice bath for a minute. Then mush the kiwi more. Cool, and then mush. Repeat this several times. Why do we cool the mixture? Cooling protects the DNA. There are DNases (enzymes that destroy DNA) in the cell's cytoplasm. The DNA is usually protected from DNases by the nuclear membrane, but that is destroyed by the soap. Cooling slows down the DNases, just like it would any enzymatic reaction. DNases are in our cells to protect us from foreign DNA (like viruses).
  5. Filter the mixture through the cheesecloth. All the groups can combine their mixtures at this point, to filter together. What is being filtered out? What is going through the filter? Students can usually see the seeds being filtered out. Most of the cell parts and the precipitated protein and carbohydrate are also being filtered out at this point.
  6. Dispense approximately 2 ml of kiwi solution into each test tube, one for each student.
  7. Being careful not to shake the tubes, add approximately 2 ml of cold 95% ethanol to each tube. What do you think the ethanol does? Why do we want it cold? We don't have to worry about the DNases at this point, because hopefully they've mostly been filtered out. What we are most concerned about is precipitating (or solidifying) the DNA. The colder something is, the more likely it will precipitate or solidify. Cooling the alcohol just increases the amount of DNA that precipitates.
  8. Take a look at your tube. What do you see in the top portion of the liquid? You can actually pick up the DNA at this point, using a toothpick, wood pencil, or glass stirring rod.

Closure:

Students will observe each other’s test tube.

Students will answer the following questions on an exit card.

Why do people use meat tenderizer?