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The nature of viral diseases, their prevention through immunization, and the misuse of antibiotics. It also covers various types of viruses, including dna and rna viruses, and the use of electrophoresis and denaturing gradient gel electrophoresis in genetic analysis. The text also touches upon the importance of precursors for dna synthesis and the role of trimethoprim as an antibiotic inhibitor.
Typology: Lecture notes
Uploaded on 01/30/2021
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Viral diseases usually cannot be cured once they have been caught. Either the victim’s body fights off the infection or it does not, although some antiviral drugs can help the host in the fight. However, viral diseases can often be prevented by immunization, if a potential victim is vaccinated before catching the virus. In this case, the invading virus will be killed by the immune system, which has been put on alert by the vaccine, and the disease will be prevented. Antibiotics are of no use against viruses; they only kill bacteria. So why do doctors often prescribe antibiotics for viral diseases like flu or colds? There are two main reasons. The valid reason is that giving antibiotics may help combat secondary or opportunistic infections caused by bacteria, especially in virally-infected patients who are in poor health. However, massive over-prescription of antibiotics occurs because many patients would be upset if faced with the truth. They would rather be given medicine, even if it is of no use, than face the fact that there is no cure. This abuse has in turn contributed to the spread of antibiotic resistance among many infectious bacteria thus creating a major health problem. immunization Process of preparing the immune system for future infection by treating the patient with weak or killed versions of an infectious agent DNA virus A virus whose genome consists of DNA plasmid Self-replicating genetic elements that are sometimes found in both prokaryotic and eukaryotic cells. They are not chromosomes nor part of the host cell’s permanent genome. Most plasmids are circular molecules of double stranded DNA although rare linear plasmids and RNA plasmids are known retrovirus Type of virus which has its genes as RNA in the virus particle but converts this to a DNA copy inside the host cell by using reverse transcriptase RNA virus A virus whose genome consists of RNA viroid Naked single-stranded circular RNA that forms a stable highly base-paired rod-like structure and replicates inside infected plant cells. Viroid’s do not encode any proteins but possess self-cleaving ribozyme activity Prions are infectious protein molecules transposable element or transposon Segment of DNA that can move as a unit from one location to another, but which always remains part of another DNA molecule DNA molecules in free solution will all move toward the positive electrode at the same speed, irrespective of their molecular weights. Electrophoresis of DNA is usually used to separate the DNA into different sizes. The pore size of agarose is suitable for separating nucleic acid polymers consisting of several hundred nucleotides or longer. Shorter fragments of DNA as well as proteins are usually separated on gels made of polyacrylamide. Alternatively, the gel can be stained with ethidium bromide, which binds tightly and specifically to DNA or RNA. . Pulsed field gel electrophoresis (PFGE) is used for analysis of very large DNA molecules from 10 kb to 10 megabases.
denaturing gradient gel electrophoresis (DGGE) Combination of gel electrophoresis with DNA denaturation that allows separation of DNA molecules differing in sequence by only a single base In practice, denaturation is due to a combination of moderately high but constant temperature (usually between 50 and 65°C) plus chemical denaturation with a mixture of urea and formamide. DGGE is used in the analysis of mutations, especially those such as base substitutions, which do not change the length of the DNA. DGGE is widely used in screening natural populations for genetic variability and/or relatedness. Peptide nucleic acid (PNA) is a totally artificial molecule that is used as a DNA analog in genetic engineering. peptide nucleic acid (PNA) Artificial analog of nucleic acids with a polypeptide backbone PNA clamp Two identical PNA strands that are joined by a flexible linker and are intended to form a triple helix with a complementary strand of DNA or RNA PNA can be used to bind to and block target sequences of DNA in purine-rich regions and prevent transcription of DNA to give mRNA The major problem with using PNA clinically is that it penetrates cells poorly— much worse than natural nucleic acids. The concentration of DNA or RNA is usually measured by absorption of ultraviolet light. 35S is usually preferable to 32P in most molecular biology applications. There are two reasons: first, the half-life of 35S is 88 days, so it doesn’t disappear so fast; second, the radiation emitted by 35S is of lower energy than for 32P.Therefore the radiation doesn’t travel so far and the radioactive bands are more precisely located and not so fuzzy. In short, 35S is more accurate. Scintillation counters measure radioactivity in liquid samples whereas autoradiography is used to locate radioactive molecules on gels or membranes. Fluorescence Process in which a molecule absorbs light of one wavelength and then emits light of another, longer, lower energy wavelength FACS machines can separate fluorescently labeled chromosomes from unlabeled ones. Liquid carrying a mixture of labeled and unlabeled chromosomes passes by a laser, which excites the fluorescent tags. Whenever the photo-detector detects fluorescence, the controller module directs that drop into the test tube on the left.
The basic components of the replication fork are the DNA gyrase, DNA helicase, DNA polymerase III, and single strand binding proteins (SSB).